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User Publications

Publications Citing the West Coast Metabolomics Center as a Service Core

We are proud to be selected as the metabolomics service provider for your research. The peer-reviewed publications below name the West Coast Metabolomics Center as their metabolomics facility of choice. Authored by external research groups (excluding our own director Dr. Oliver Fiehn and Dr. John W. Newman of the USDA WHNRC).

515
Publications
18,328
Total Citations
2013–2026
Year Range
240
Unique Journals

2026 (38)

  1. Glioblastoma stem cells resist cuproptosis with circadian variation of copper levels
    Yuan F, Wu X, Yuan H, Wang D, Huang T, Zhang P, Mi H, Wu W, … et al. (17 authors)
    The Journal of clinical investigation · 8 cites · DOI · PMC
  2. The blood metabolome of brain health in midlife and influences of genes, microbiome and exposome
    Ahmad S, Wu T, Arnold M, Hankemeier T, Ghanbari M, Roshchupkin G, Uitterlinden AG, Borkowski K, … et al. (15 authors)
    Nature aging · 2 cites · DOI · PMC
  3. Plasma and Urinary Metabolomic Profiles Associated with the Salt Sensitivity of Blood Pressure in the Dietary Approaches to Stop Hypertension-Sodium Trial
    Zheng X, Nist KM, Velkoska E, Wainford RD
    The Journal of nutrition · 2 cites · DOI · PMC
  4. Gut microbe-derived N-acyl serinol lipids shape host postprandial metabolic homeostasis
    Dutta S, Mahen KK, Massey WJ, Varadharajan V, Burrows AC, Horak AJ 3rd, Mrdjen M, Mouannes N, … et al. (29 authors)
    Proceedings of the National Academy of Sciences of the United States of America · 2 cites · DOI · PMC
  5. Preoperative Cer(d18:1/24:0) Shows Promise as a Candidate Predictor of Plasma Lipid Phenotypes Following Roux-en-Y Gastric Bypass in Women: An Exploratory Analysis of the SURMetaGIT Study
    Lemos GO, Torrinhas RSM, Pino JMV, Calder PC, Heymsfield SB, Machado NM, Waitzberg DL
    Journal of obesity · 1 cite · DOI · PMC
  6. Niche exclusion of a lung pathogen in mice with designed probiotic communities
    Hern KE, Phillips AM, Mageeney CM, Williams KP, Sinha A, Carlson HK, Poorey K, Collette NM, … et al. (10 authors)
    eLife · 1 cite · DOI · PMC
  7. Assessing Long-Term Changes in Endometrial Morphology and Functionality in Dairy Cows With Metritis
    Rashid MH, Pereira AM, Pereira FNS, Costa MCO, Santos EF, Christensen L, Sexton JA, Ciccarelli M, … et al. (13 authors)
    Reproduction in domestic animals = Zuchthygiene · 1 cite · DOI · PMC
  8. Serum Metabolite Profiles in Adults With Abdominal Obesity in Response to Consuming 1 Avocado Daily for 6 Months: An Exploratory Analysis
    Matthan NR, Duscova E, Matuszek G, Zhang W, Kris-Etherton PM, Petersen KS, Rajaram S, Li Z, … et al. (11 authors)
    Journal of the American Heart Association · 1 cite · DOI · PMC
  9. Changes in Plasma Sphingolipid Metabolites Following Roux-En-Y Gastric Bypass in Women With Obesity and Type 2 Diabetes: A Pilot Metabolomic Cohort Study
    Lemos GO, Torrinhas RS, Machado NM, Waitzberg DL
    Lipids · 1 cite · DOI · PMC
  10. Beyond nocardioform: Transcriptionally active microbes and host responses in equine mucoid placentitis
    van Heule M, Verstraete M, Norris JK, Graniczkowsa KB, Scoggin KE, Ali HE, Ball BA, De Spiegelaere W, … et al. (11 authors)
    Equine veterinary journal · 1 cite · DOI · PMC
  11. Distinct CSF lipidomic profiles are associated with five proteomic subtypes in patients with Alzheimer's disease
    Malliou G, Reus LM, Pijnenburg YAL, van der Flier WM, de Wit NM, Chornyi S, Kooij G, de Vries HE, … et al. (12 authors)
    Molecular neurodegeneration advances · 1 cite · DOI · PMC
  12. A preliminary nontargeted lipidomics analysis reveals greater acylcarnitine in dark-cutting beef longissimus lumborum across visual severity levels
    Harr KM, Scott MA, S P Santos E, Cônsolo NRB, Johnson L, Mafi GG, Pfeiffer MM, Ramanathan R
    Journal of animal science · 1 cite · DOI · PMC
  13. Non-nutritive sweeteners improve growth, reduce diarrhea, and modulate intestinal and systemic metabolism in weaned pigs
    Jansen MR, Ludorf C, Barber RE, Polniak VI, Luttman AM, Rozeboom DW, Kim K
    Journal of animal science · 1 cite · DOI · PMC
  14. Effects of Minimally Processed Red Meat within a Plant-Forward Diet on Biomarkers of Physical and Cognitive Aging: A Randomized Controlled Crossover Feeding Trial
    Vaezi S, de Vargas BO, Weidauer L, Freeling JL, Dey M
    Current developments in nutrition · 1 cite · DOI · PMC
  15. Population-Associated Molecular Variation in Histologically Normal Breast Tissue Is Associated with Distinct Baseline Transcriptional States
    Hulsy WD, Salazar K, Chalkia D, Chavez Y, Zhao Y, Halkia G, Razorenova OV, Nikolaidis N
    International journal of molecular sciences · DOI · PMC
  16. Uncovering a Sex-Specific cAMP Landscape in Vascular Smooth Muscle
    da Silva EAP, Vieira-Alves I, Voorhees H, Sirish P, Daghbouche-Rubio N, Baudel MM, Xiang YK, Navedo MF, … et al. (9 authors)
    bioRxiv : the preprint server for biology · DOI · PMC
  17. Renal glycosuria triggers a coordinated mannose and glutamine metabolic program to maintain glucose homeostasis
    Rashid N, Otunla M, Hasan N, Hodges MJ, Qaissi HH, Faniyan TS, Clement PR, Lin P, … et al. (13 authors)
    Cell reports · DOI · PMC
  18. A DGA-aligned pulse-protein diet may support iron homeostasis in older adults: an exploratory analysis of the PRODMED1 trial
    de Vargas BO, Freeling JL, Vaezi S, Dey M
    Frontiers in nutrition · DOI · PMC
  19. Adaptive and degenerative mitochondrial remodeling define distinct redox states in age-related macular degeneration
    Giulivi C, Villafuerte-Trisolini C, Greenblatt ZL, Dang J, Tork A, Mullah R, Le S, Min A, … et al. (22 authors)
    Redox biology · DOI · PMC
  20. Compost and rootstock effects on fibrous root physiology and bacterial community composition in young citrus trees under endemic Huanglongbing
    Pugina G, Tardivo C, Monus B, Dawson E, Strauss SL, Albrecht U
    Scientific reports · DOI · PMC
  21. Integrated Gene-Metabolite Network Analysis Identifies Pathways Associated with Immune Regulation and Metabolic Remodeling in Subfertile Beef Heifers
    Banerjee P, Phillips R, Holliman AG, Rodning SP, Diniz WJS, Dyce PW
    Genes · DOI · PMC
  22. Select plasma oxylipins as potential biomarkers of effective indomethacin treatment response in preterm infants with patent ductus arteriosus
    Nguyen KCK, Yeung CHT, Scott A, Velenosi TJ, Lewis T
    Metabolomics : Official journal of the Metabolomic Society · DOI · PMC
  23. Integrated multi-omic analyses reveal novel gene-metabolite relationships in human steatohepatitic hepatocellular carcinoma
    Anspach GB, Flight RM, Park S, He D, Wang C, Moseley HNB, Helsley RN
    Journal of lipid research · DOI · PMC
  24. Trans fatty acids alter renal health in TGFβ3 mice with fibrosis revealed by metabolomics and lipidomics
    Lanzon B, Escasany E, Carrasco AG, Gonzalez-Riano C, Horrillo D, Corrales P, García A, Ruperez FJ, … et al. (10 authors)
    iScience · DOI · PMC
  25. Gut microbiome drives glycodeoxycholic acid-mediated attenuation of hypertension
    Aryal S, Mell B, Tummala R, Manandhar I, Kumariya S, Kondapalli N, Yeoh BS, Ahlidja W, … et al. (19 authors)
    Gut microbes · DOI · PMC
  26. Population-associated molecular variation in histologically normal breast tissue is context-dependent and associated with distinct transcriptional states
    Hulsy WD, Salazar K, Chalkia D, Chavez Y, Zhao Y, Halkia G, Razorenova OV, Nikolaidis N
    bioRxiv : the preprint server for biology · DOI · PMC
  27. The Language of Elution: Autoregressive Prediction of the Next Feature in Untargeted LC-HRMS Lipidomics
    Wijesinghe DS
    ArXiv · PMC
  28. Metabolic Reprogramming Coordinates Mannose and Glutamine Metabolism to Maintain Glucose Homeostasis During Glycosuria
    Rashid N, Otunla M, Hasan N, Hodges MJ, Qaissi HH, Faniyan TS, Clement PR, Lin P, … et al. (13 authors)
    bioRxiv : the preprint server for biology · DOI · PMC
  29. Transcriptomic and metabolomic changes associated with the induction and initiation of juice sacs in citrus fruit
    Assili S, Haim D, Doron-Faigenboim A, Nir I, Sadka A
    Planta · DOI · PMC
  30. Integrated multi-omics profiling reveals novel molecular biomarkers and pathways associated with Fragile X-associated tremor/ataxia syndrome
    Zafarullah M, Ponzini M, Kim K, Hagerman PJ, Hagerman RJ, Tassone F
    Frontiers in molecular neuroscience · DOI · PMC
  31. Exploring cardiometabolic markers in adverse pregnancy outcomes: insights from the GROWell study
    Kuodza GE, Keeton VF, Williams LA, Kawai R, Mendiola AJP, Torres CG, Smith PM, Phipps JE, … et al. (16 authors)
    Research square · DOI · PMC
  32. New Insights into Dietary L-Glutamate and L-Aspartate Modulation of Hematology, Immune Responses, and Metabolite Profiles in Enterotoxigenic Escherichia coli Challenged Piglets
    Wongchanla S, Park S, Sun S, Ji P, Liu Y
    Metabolites · DOI · PMC
  33. Cattle type and liver abscess occurrence impact aged beef steak instrumental retail color and metabolomics
    Eckhardt ME, McCracken MB, Lucherk LW, Schwartz TE, Baker EC, Lawrence TE
    Journal of animal science · DOI · PMC
  34. The Metabolomic Signature of Stressful Life Events
    Tian Y, Li-Gao R, Alshehri T, Brydges CR, Arnold M, Mahmoudiandehkordi S, Kastenmüller G, Mook-Kanamori DO, … et al. (17 authors)
    medRxiv : the preprint server for health sciences · DOI · PMC
  35. Metabolite correlation-based network analysis combined with machine learning techniques highlights LOX biosynthesis in Vanilla planifolia and Vanilla pompona source leaves
    Toubiana D, Moon P, Bassil E, Maruenda H
    Scientific reports · DOI · PMC
  36. A pilot study reveals plasma metabolomic and lipidomic signatures of mustard lung disease
    Nobakht M Gh BF, Bagheri H, Keshet U, Ghanei M
    Scientific reports · DOI · PMC
  37. Ketone bodies mitigate against systemic inflammation-induced changes in brain energy metabolism and delirium-like deficits in aged mice
    Hollier PL, Chui MKK, Cuitavi J, Denver P, Delaney HJ, Newman JC, Cunningham C
    bioRxiv : the preprint server for biology · DOI · PMC
  38. The effects of a commercial essential oil containing resin-derived tricyclic diterpenoids on blood metabolite profile, fecal characteristics, immunomarkers, microbiota, and metabolites of healthy, unchallenged adult Labradors
    Koulicoff LA, Liu G, Polizel GHG, Robertson C, Timlin CL, Schmidt T, Turck J, Santana MHA, … et al. (10 authors)
    Journal of animal science · DOI · PMC

2025 (51)

  1. Apoplastic metabolomics reveals sugars as mesophyll messengers regulating guard cell ion transport under red light
    Zait Y, Zhu M, Ando E, Zhou Y, Yaaran A, Yon S, Okamoto M, Hayashi Y, … et al. (13 authors)
    Nature plants · 17 cites · DOI · PMC
  2. The fermented cabbage metabolome and its protection against cytokine-induced intestinal barrier disruption of Caco-2 monolayers
    Wei L, Marco ML
    Applied and environmental microbiology · 14 cites · DOI · PMC
  3. Transcriptional and epigenetic targets of MEF2C in human microglia contribute to cellular functions related to autism risk and age-related disease
    Nguyen C, Broersma EH, Warden AS, Mora C, Han CZ, Keulen Z, Spann N, Wang J, … et al. (21 authors)
    Nature immunology · 12 cites · DOI · PMC
  4. DKC1-mediated pseudouridylation of rRNA targets hnRNP A1 to sustain IRES-dependent translation and ATF4-driven metabolic adaptation
    Gupta A, Bansal M, Ding J, Karki S, Pandit M, Sudarshan S, Ding HF
    Science advances · 9 cites · DOI · PMC
  5. Mucilage produced by aerial roots hosts diazotrophs that provide nitrogen in Sorghum bicolor
    Venado RE, Wilker J, Pankievicz VCS, Infante V, MacIntyre A, Wolf ESA, Vela S, Robbins F, … et al. (11 authors)
    PLoS biology · 7 cites · DOI · PMC
  6. Differences in uterine and serum metabolome associated with clinical cure failure of metritis in dairy cows†
    Pereira FNS, Pereira AM, Galvão KN, Bisinotto RS, Figueiredo CC
    Biology of reproduction · 7 cites · DOI · PMC
  7. Slc7a5 promotes T cell anti-tumor immunity through sustaining cytotoxic T lymphocyte effector function
    Lu C, Liang L, Wu Y, Yang Y, Poschel D, Zhao Y, Pei L, Yu M, … et al. (13 authors)
    Oncogene · 6 cites · DOI · PMC
  8. Quantitative trait loci mapping of circulating metabolites in cerebrospinal fluid to uncover biological mechanisms involved in brain-related phenotypes
    Reus LM, Boltz T, Francia M, Bot M, Ramesh N, Koromina M, Pijnenburg YAL, den Braber A, … et al. (15 authors)
    Molecular psychiatry · 5 cites · DOI · PMC
  9. Normalizing Body Weight with a Dietary Strategy Mitigates Obesity-Accelerated Pancreatic Carcinogenesis in Mice
    Wirkus J, Ead AS, Krga I, Wang Y, Pontifex MG, Muller M, Vauzour D, Matsukuma KE, … et al. (10 authors)
    The Journal of nutrition · 5 cites · DOI · PMC
  10. Longitudinal multi-omics analyses of chemotherapy-induced peripheral neuropathy in response to taxanes
    Sharma A, Johnson KB, Sen A, Bie B, Rhoades EE, Steenblik J, DeVecchio J, Hershberger C, … et al. (14 authors)
    BMC cancer · 5 cites · DOI · PMC
  11. O-GlcNAcylation of nuclear proteins in the mouse liver exhibit daily oscillations that are influenced by meal timing
    Liu X, Cai YD, Hou C, Liu X, Luo Y, Mendiola AJP, Xu X, Luo Y, … et al. (15 authors)
    PLoS biology · 5 cites · DOI · PMC
  12. APOE genotype influences on the brain metabolome of aging mice - role for mitochondrial energetics in mechanisms of resilience in APOE2 genotype
    Borkowski K, Liang N, Zhao N, Arnold M, Huynh K, Karu N, Mahmoudiandehkordi S, Kueider-Paisley A, … et al. (12 authors)
    Molecular neurodegeneration · 5 cites · DOI · PMC
  13. Metabolomic and transcriptomic remodeling of bone marrow myeloid cells in response to maternal obesity
    Alharithi YJ, Phillips EA, Wilson TD, Couvillion SP, Nicora CD, Darakjian P, Rakshe S, Fei SS, … et al. (13 authors)
    American journal of physiology. Endocrinology and metabolism · 5 cites · DOI · PMC
  14. A High Omega-3, Low Omega-6 Diet Reduces Headache Frequency and Intensity in Persistent Post-Traumatic Headache: A Randomized Trial
    Zamora D, Kenney K, Horowitz M, Cole WR, MacIntosh BA, Arrieux JP, Dunlap M, Palsson OS, … et al. (19 authors)
    Journal of neurotrauma · 4 cites · DOI · PMC
  15. Unsaturated fat alters clock phosphorylation to align rhythms to the season in mice
    Levine DC, Reeh RH, McMahon T, Mandrup-Poulsen T, Fu YH, Ptáček LJ
    Science (New York, N.Y.) · 4 cites · DOI · PMC
  16. A genome-wide CRISPR screen identifies GRA38 as a key regulator of lipid homeostasis during Toxoplasma gondii adaptation to lipid-rich conditions
    Bitew MA, Paredes-Santos TC, Maru P, Krishnamurthy S, Wang Y, Sangaré LO, Duley S, Yamaryo-Botté Y, … et al. (10 authors)
    Nature communications · 4 cites · DOI · PMC
  17. NAD Metabolism Regulates Proliferation of Macrophages in Atherosclerosis
    Sinha SK, Swichkow CR, Farahi L, Péterfy M, Pan C, Zhou Z, Seldin MM, Mack JJ, … et al. (11 authors)
    Arteriosclerosis, thrombosis, and vascular biology · 4 cites · DOI · PMC
  18. The role of alpha-lactalbumin in modulating tryptophan metabolism and serotonin synthesis
    Shoff S, He X, Lee H, Zhang Z, Mishchuk DO, Ozturk G, Barile D, Hartvigsen ML, … et al. (10 authors)
    NPJ science of food · 4 cites · DOI · PMC
  19. Metabolic and morphometric analysis of allometric and total liver growth in Post-Hatch chickens
    Van Every H, Schmidt CJ
    Metabolomics : Official journal of the Metabolomic Society · 4 cites · DOI · PMC
  20. Synergistic Effect of Ribitol and Shikonin Promotes Apoptosis in Breast Cancer Cells
    Doddapaneni R, Tucker JD, Lu PJ, Lu QL
    International journal of molecular sciences · 4 cites · DOI · PMC
  21. Gestational exposure to particulate matter from urban wildfires is associated with changes in circulating oxylipins but not flame retardants 7 to 13 months post-exposure
    Park E, Shen Q, Zhang Z, O'Brien CE, Goodrich AJ, Angel EE, Hertz-Picciotto I, Tancredi DJ, … et al. (12 authors)
    Environment international · 3 cites · DOI · PMC
  22. Anticancer Properties Against Select Cancer Cell Lines and Metabolomics Analysis of Tender Coconut Water
    Lakshmanan J, Jaganathan VL, Zhang B, Werner G, Allen TS, Schultz DJ, Klinge CM, Harbrecht BG
    Anti-cancer agents in medicinal chemistry · 3 cites · DOI · PMC
  23. Anandamide Alters Glycolytic Activity in Streptococcus mutans: Metabolomics and Stable Isotope Labeling Study
    Wolfson G, Steinberg D, Eliassaf A, Morshina A, Enríquez-Rodríguez CJ, Polacheck I, Korem M, Shalev O
    International journal of molecular sciences · 3 cites · DOI · PMC
  24. Predictive modeling of ARDS mortality integrating biomarker/cytokine, clinical and metabolomic data
    Rafikov R, Thompson DM, Rafikova O, Camp SM, Ribas RA, Sun RC, Gentry MS, Casanova NG, … et al. (9 authors)
    Translational research : the journal of laboratory and clinical medicine · 2 cites · DOI · PMC
  25. The Metabolic Transition Between Fasting and Feeding Alters Aging-Associated Metabolites, Lowers BCAAs, and Stimulates FGF21 Production in Humans
    Cagigas ML, Santiappillai NT, Commissati S, Fiorito G, Masedunskas A, Rajakumar G, de Ciutiis I, Goldhamer A, … et al. (11 authors)
    Aging cell · 2 cites · DOI · PMC
  26. Impact of dietary supplementation of Bacillus subtilis on the metabolic profiles and microbial ecology of weanling pigs experimentally infected with a pathogenic Escherichia coli
    Kim K, Park S, Jinno C, Ji P, Liu Y
    Journal of animal science and biotechnology · 2 cites · DOI · PMC
  27. Iron Stress Reprograms Enterocyte Metabolism
    Navazesh SE, Ji P
    Metabolites · 2 cites · DOI · PMC
  28. Lettuce immune responses and apoplastic metabolite profile contribute to reduced internal leaf colonization by human bacterial pathogens
    Jacob C, Melotto M
    BMC plant biology · 2 cites · DOI · PMC
  29. Physiological and Metabolic Responses of Wheat (Triticum aestivum L.) after One-Generation Exposure to Perfluorooctanesulfonic Acid (PFOS)
    Ogundele OR, Fakunle M, Pope-Buss R, Churchman J, Akinwande B, Kirwa N, Ofoegbu PC, Rico CM
    ACS agricultural science & technology · 2 cites · DOI · PMC
  30. Disruption of the EmrAB-TolC efflux pump of Escherichia coli induces global metabolic changes in multiple growth conditions
    Harmon DE, Adamson K, Wiersma J
    microPublication biology · 2 cites · DOI · PMC
  31. Human adenovirus serotype 5 infection dysregulates cysteine, purine, and unsaturated fatty acid metabolism in fibroblasts
    Sanchez BC, Ortiz RM, Grasis JA
    FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2 cites · DOI · PMC
  32. Integrative analysis of cerebrospinal fluid biomarkers, metabolomics, and polygenic risk reveals novel metabolite associations with Alzheimer's disease
    Francia M, Ramesh N, Boltz T, Bot M, van der Flier WM, Visser PJ, van der Lee S, Teunissen CE, … et al. (14 authors)
    Journal of Alzheimer's disease : JAD · 1 cite · DOI · PMC
  33. Ferredoxin 2 Is Critical for Tumor Suppression and Lipid Homeostasis but Dispensable for Embryonic Development
    Zhang J, Zhang Y, Mohibi S, Perng V, Bustamante M, Shi Y, Nakajima K, Chen M, … et al. (9 authors)
    The American journal of pathology · 1 cite · DOI · PMC
  34. Identification of a Novel Lipidomic Biomarker for Hepatocyte Carcinoma Diagnosis: Advanced Boosting Machine Learning Techniques Integrated with Explainable Artificial Intelligence
    Yagin FH, Colak C, Al-Hashem F, Alzakari SA, Alhussan AA, Aghaei M
    Metabolites · 1 cite · DOI · PMC
  35. Salmonella enterica exploits the auxin signaling pathway to overcome stomatal immunity
    Fochs B, Jaramillo Z, Yang HW, Yeemin J, Melotto M
    PLoS pathogens · 1 cite · DOI · PMC
  36. Functional gut variability drives metabolic and transcriptional features in neonatal piglets
    He X, Shoff S, Lee H, Hartvigsen ML, Kvistgaard AS, Slupsky CM
    NPJ science of food · 1 cite · DOI · PMC
  37. Air pollution and Alzheimer disease phenotype deplete esterified proresolving lipid mediator reserves in the brain
    Taha AY, Shen Q, Otoki Y, Liang N, Patten KT, Valenzuela AE, Wallis CD, Rowland DJ, … et al. (15 authors)
    JCI insight · 1 cite · DOI · PMC
  38. Cecal Metabolome Profiles of Turkey Poults in Response to Salmonella Heidelberg Challenge with or Without Turkey-Derived Lactobacillus Probiotic and Trans-Cinnamaldehyde
    Dewi G, Ramanathan R, Kollanoor Johny A
    Animals : an open access journal from MDPI · 1 cite · DOI · PMC
  39. Integrating spatial mapping and metabolomics: A novel platform for bioactive compound discovery and saline land reclamation
    Andriyas T, Leksungnoen N, Pongchaidacha P, Uthairangsee A, Uthairatsamee S, Doomnil P, Ku-Or Y, Ngernsaengsaruay C, … et al. (11 authors)
    Computational and structural biotechnology journal · 1 cite · DOI · PMC
  40. Soil microbial adaptation to carbon deprivation: shifts in lignocellulolytic gene profiles following long-term plant exclusion
    Fidler DB, George PBL, Le Brun LJ, Griffiths RI, Jones DL, McDonald JE
    Environmental microbiome · DOI · PMC
  41. Dietary Oligosaccharides Alter Blood and Fecal Metabolites in Holstein Dairy Calves
    Santos R, Kluppel LM, Senevirathne N, Peres Prietsch J, Sunkesula V, Akinkuotu O, Awosile B, Trevisi E, … et al. (9 authors)
    Animals : an open access journal from MDPI · DOI · PMC
  42. Impact of Natural Fermentation on Mineral Composition, Resistant and Non-Resistant Starches, Microbial Diversity, and Global Metabolite Profiles in Commercial Poi from Hawai'i
    Stillwell N, Khadka VS, Nerurkar PV
    Metabolites · DOI · PMC
  43. Simultaneous Isolation and Characterization of Lipoprotein Classes in Plasma, Including HDL Subclasses and the Uncharacterized Dense HDL
    Agus J, Gololobova O, Zheng J, Oloumi A, Tang X, Hong B, Lei S, Turchinovich A, … et al. (13 authors)
    bioRxiv : the preprint server for biology · DOI · PMC
  44. Exposure of Wheat Plants to Cerium Oxide Nanoparticles for Two Generations Affects the Third Generation's Responses to Perfluorooctanesulfonic Acid
    Clubb P, Pope-Buss R, Reyes M, Linson J, Horn E, Peralta-Videa J, Medina-Velo IA, Rico CM
    ACS omega · DOI · PMC
  45. Packed Red Blood Cell and Whole Blood Perfusates during Ex Vivo Normothermic Perfusion for Assessment of High-Risk Donor Kidneys
    Ahmadi A, Yang H, Jen KY, Fan S, Palma I, Sageshima J, Goussous N, Roshanravan B, … et al. (9 authors)
    Kidney360 · DOI · PMC
  46. The Oncometabolite 2-Hydroxyglutarate Is Upregulated in Post-Prostatectomy PSA Recurrence of Prostate Cancer: A Metabolomic Analysis
    Hairston DWS, Sridharan-Weaver S, Gandhi A, Batra N, Durbin-Johnson BP, Dall'Era MA, Ghosh PM
    Molecules (Basel, Switzerland) · DOI · PMC
  47. Mealtime alters daily rhythm in nuclear O-GlcNAc proteome to regulate hepatic gene expression
    Liu X, Cai YD, Hou C, Liu X, Luo Y, Mendiola AJP, Xu X, Luo Y, … et al. (15 authors)
    bioRxiv : the preprint server for biology · DOI · PMC
  48. Limited effects of tannin supplementation on the dairy cattle fecal microbiome with modulation of metabolites
    Klein ML, Erikson CB, McCabe CJ, Huang L, Rodrigues JLM, Mitloehner FM
    Frontiers in microbiology · DOI · PMC
  49. Insulin/insulin-like growth factor signaling pathway promotes higher fat storage in Drosophila females
    Biswas P, Bako JA, Liston JB, Yu H, Wat LW, Miller CJ, Gordon MD, Huan T, … et al. (10 authors)
    bioRxiv : the preprint server for biology · DOI · PMC
  50. A genome-wide CRISPR screen identifies GRA38 as a key regulator of lipid homeostasis during Toxoplasma gondii adaptation to lipid-rich conditions
    Bitew MA, Paredes-Santos TC, Maru P, Krishnamurthy S, Wang Y, Sangaré LO, Duley S, Yamaryo-Botté Y, … et al. (10 authors)
    Research square · DOI · PMC
  51. Attenuated adenosine mediated immune-dampening increases natural killer cell activity in early age-related macular degeneration
    Nair AP, Ghosh S, Babu VS, Praveen M, Xin Y, Sahu GR, Vaidya TA, Debnath J, … et al. (22 authors)
    bioRxiv : the preprint server for biology · DOI · PMC

2024 (51)

  1. Epithelial hypoxia maintains colonization resistance against Candida albicans
    Savage HP, Bays DJ, Tiffany CR, Gonzalez MAF, Bejarano EJ, Carvalho TP, Luo Z, Masson HLP, … et al. (13 authors)
    Cell host & microbe · 46 cites · DOI · PMC
  2. Salmonella re-engineers the intestinal environment to break colonization resistance in the presence of a compositionally intact microbiota
    Rogers AWL, Radlinski LC, Nguyen H, Tiffany CR, Carvalho TP, Masson HLP, Goodson ML, Bechtold L, … et al. (20 authors)
    Cell host & microbe · 40 cites · DOI · PMC
  3. Serum Bile Acids Improve Prediction of Alzheimer's Progression in a Sex-Dependent Manner
    Chen T, Wang L, Xie G, Kristal BS, Zheng X, Sun T, Arnold M, Louie G, … et al. (23 authors)
    Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 32 cites · DOI · PMC
  4. FGF21 Induces Skeletal Muscle Atrophy and Increases Amino Acids in Female Mice: A Potential Role for Glucocorticoids
    Larson KR, Jayakrishnan D, Soto Sauza KA, Goodson ML, Chaffin AT, Davidyan A, Pathak S, Fang Y, … et al. (11 authors)
    Endocrinology · 24 cites · DOI · PMC
  5. Differential contributions of the gut microbiota and metabolome to pathomechanisms in ulcerative colitis: an in vitro analysis
    Poppe J, Boesmans L, Vieira-Silva S, Deroover L, Tito R, Vandeputte D, Vandermeulen G, De Preter V, … et al. (12 authors)
    Gut microbes · 19 cites · DOI · PMC
  6. Exercise mitigates flow recirculation and activates metabolic transducer SCD1 to catalyze vascular protective metabolites
    Cavallero S, Roustaei M, Satta S, Cho JM, Phan H, Baek KI, Blázquez-Medela AM, Gonzalez-Ramos S, … et al. (17 authors)
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  8. Determining the association between gut microbiota and its metabolites with higher intestinal Immunoglobulin A response
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  9. Associations of circulating saturated long-chain fatty acids with risk of mild cognitive impairment and Alzheimer's disease in the Alzheimer's Disease Neuroimaging Initiative (ADNI) cohort
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  33. Perspective: Challenges and Future Directions in Clinical Research with Nuts and Berries
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  36. Metabolic Reprogramming by Ribitol Expands the Therapeutic Window of BETi JQ1 against Breast Cancer
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  37. Brain Metabolomics in Fragile X-Associated Tremor/Ataxia Syndrome (FXTAS)
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  38. Euglena gracilis Extract Protects From Tobacco Smoke Carcinogen-Induced Lung Cancer by Altering Gut Microbiota Metabolome
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  45. Associations between Plasma Lipid Mediators and Chronic Daily Headache Outcomes in Patients Randomized to a Low Linoleic Acid Diet with or without Added Omega-3 Fatty Acids
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    Metabolites · 4 cites · DOI · PMC
  46. Medium Roasting and Brewing Methods Differentially Modulate Global Metabolites, Lipids, Biogenic Amines, Minerals, and Antioxidant Capacity of Hawai'i-Grown Coffee (Coffea arabica)
    Nerurkar PV, Yokoyama J, Ichimura K, Kutscher S, Wong J, Bittenbender HC, Deng Y
    Metabolites · 4 cites · DOI · PMC
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  49. Metabolomic and cultivation insights into the tolerance of the spacecraft-associated Acinetobacter toward Kleenol 30, a cleanroom floor detergent
    Mogul R, Miller DR, Ramos B, Lalla SJ
    Frontiers in microbiology · 3 cites · DOI · PMC
  50. One-carbon metabolic enzymes are regulated during cell division and make distinct contributions to the metabolome and cell cycle progression in Saccharomyces cerevisiae
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  51. Dietary Supplementation with Botanical Blends Modified Intestinal Microbiota and Metabolomics of Weaned Pigs Experimentally Infected with Enterotoxigenic Escherichia coli
    Jinno C, Kim K, Wong B, Wall E, Sripathy R, Liu Y
    Microorganisms · 3 cites · DOI · PMC
  52. Metabolomics and bioinformatic analyses to determine the effects of oxygen exposure within longissimus lumborum steak on beef discoloration
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    Journal of animal science · 1 cite · DOI · PMC
  53. Effects of Individual Circulating FFAs on Plasma and Hepatic FFA Epoxides, Diols, and Epoxide-Diol Ratios as Indices of Soluble Epoxide Hydrolase Activity
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    International journal of molecular sciences · 1 cite · DOI · PMC
  54. Comparison of Plasma Metabolome Response to Diets Enriched in Soybean and Partially-Hydrogenated Soybean Oil in Moderately Hypercholesterolemic Adults-A Pilot Study
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    Metabolites · 1 cite · DOI · PMC
  55. LC-QToF-Based Metabolomics Identifies Aberrant Tissue Metabolites Associated with a Higher-Fat Diet and Their 'Reversion to Healthy' with Dietary Probiotic Supplementation
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    Metabolites · 1 cite · DOI · PMC
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    Trevelline BK, Kohl KD
    Proceedings of the National Academy of Sciences of the United States of America · 127 cites · DOI · PMC
  2. Muscle-generated BDNF (brain derived neurotrophic factor) maintains mitochondrial quality control in female mice
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    Autophagy · 104 cites · DOI · PMC
  3. Foodomics: Analytical Opportunities and Challenges
    Valdés A, Álvarez-Rivera G, Socas-Rodríguez B, Herrero M, Ibáñez E, Cifuentes A
    Analytical chemistry · 57 cites · DOI · PMC
  4. Oxidative ornithine metabolism supports non-inflammatory C. difficile colonization
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    Nature metabolism · 55 cites · DOI · PMC
  5. Longitudinal Analysis of the Microbiome and Metabolome in the 5xfAD Mouse Model of Alzheimer's Disease
    Dunham SJB, McNair KA, Adams ED, Avelar-Barragan J, Forner S, Mapstone M, Whiteson KL
    mBio · 50 cites · DOI · PMC
  6. Enhanced lipogenesis through Pparγ helps cavefish adapt to food scarcity
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    Current biology : CB · 46 cites · DOI · PMC
  7. The metabolome of Mexican cavefish shows a convergent signature highlighting sugar, antioxidant, and Ageing-Related metabolites
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  8. FGF21 controls hepatic lipid metabolism via sex-dependent interorgan crosstalk
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    Scientific reports · 29 cites · DOI · PMC
  10. Effect of chronic and acute enterotoxigenic E. coli challenge on growth performance, intestinal inflammation, microbiome, and metabolome of weaned piglets
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  12. H3K9me3 represses G6PD expression to suppress the pentose phosphate pathway and ROS production to promote human mesothelioma growth
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    Oncogene · 23 cites · DOI · PMC
  13. Intestinal Microbiota Remodeling Protects Mice from Western Diet-Induced Brain Inflammation and Cognitive Decline
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    Cells · 23 cites · DOI · PMC
  14. Amanida: an R package for meta-analysis of metabolomics non-integral data
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    Bioinformatics (Oxford, England) · 22 cites · DOI · PMC
  15. A Mixture of Valine and Isoleucine Restores the Growth of Protein-Restricted Pigs Likely through Improved Gut Development, Hepatic IGF-1 Pathway, and Plasma Metabolomic Profile
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  16. Age-dependent impact of two exercise training regimens on genomic and metabolic remodeling in skeletal muscle and liver of male mice
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  17. Integration of Infant Metabolite, Genetic, and Islet Autoimmunity Signatures to Predict Type 1 Diabetes by Age 6 Years
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  19. Glutathione deficiency decreases lipid droplet stores and increases reactive oxygen species in mouse oocytes†
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  20. Iron Deficiency and Overload Modulate the Inflammatory Responses and Metabolism of Alveolar Macrophages
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  22. Prostate cancer cells demonstrate unique metabolism and substrate adaptability acutely after androgen deprivation therapy
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  24. The RNA-binding protein RBM24 regulates lipid metabolism and SLC7A11 mRNA stability to modulate ferroptosis and inflammatory response
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  25. Untargeted Metabolomics Identify a Panel of Urinary Biomarkers for the Diagnosis of Urothelial Carcinoma of the Bladder, as Compared to Urolithiasis with or without Urinary Tract Infection in Dogs
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  28. Chronic exposure to traffic-related air pollution reduces lipid mediators of linoleic acid and soluble epoxide hydrolase in serum of female rats
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  29. Resistant starch type-4 intake alters circulating bile acids in human subjects
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  30. Loss of neurexin-1 in Drosophila melanogaster results in altered energy metabolism and increased seizure susceptibility
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    Human molecular genetics · 9 cites · DOI · PMC
  31. The histone deacetylases Rpd3 and Hst1 antagonistically regulate de novo NAD(+) metabolism in the budding yeast Saccharomyces cerevisiae
    Groth B, Huang CC, Lin SJ
    The Journal of biological chemistry · 9 cites · DOI · PMC
  32. Trace amounts of antibiotic altered metabolomic and microbial profiles of weaned pigs infected with a pathogenic E. coli
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    Journal of animal science and biotechnology · 9 cites · DOI · PMC
  33. Plasma Metabolite Profiles Following Consumption of Animal Protein and Soybean-Based Diet in Hypercholesterolemic Postmenopausal Women
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    Metabolites · 9 cites · DOI · PMC
  34. Metabolomics profiles of premenopausal women are different based on O-desmethylangolensin metabotype
    Frankenfeld CL, Maskarinec G, Franke AA
    The British journal of nutrition · 8 cites · DOI · PMC
  35. Providing metabolomics education and training: pedagogy and considerations
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    Metabolomics : Official journal of the Metabolomic Society · 8 cites · DOI · PMC
  36. Pharmacometabonomic association of cyclophosphamide 4-hydroxylation in hematopoietic cell transplant recipients
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    Clinical and translational science · 8 cites · DOI · PMC
  37. Lipidomics of cyclophosphamide 4-hydroxylation in patients receiving post-transplant cyclophosphamide
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    Clinical and translational science · 7 cites · DOI · PMC
  38. Calorie Restriction Rescues Mitochondrial Dysfunction in Adck2-Deficient Skeletal Muscle
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    Frontiers in physiology · 7 cites · DOI · PMC
  39. Plasma Metabolite Response to Simple, Refined and Unrefined Carbohydrate-Enriched Diets in Older Adults-Randomized Controlled Crossover Trial
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    Metabolites · 7 cites · DOI · PMC
  40. Metabolomic signatures of low- and high-adiposity neonates differ based on maternal BMI
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    American journal of physiology. Endocrinology and metabolism · 6 cites · DOI · PMC
  41. Promotion of diet-induced obesity and metabolic syndromes by BID is associated with gut microbiota
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    Hepatology communications · 6 cites · DOI · PMC
  42. Metabolomic Analysis of Human Astrocytes in Lipotoxic Condition: Potential Biomarker Identification by Machine Learning Modeling
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    Biomolecules · 6 cites · DOI · PMC
  43. Integrated Metabolomics and Lipidomics Reveal High Accumulation of Glycerophospholipids in Human Astrocytes under the Lipotoxic Effect of Palmitic Acid and Tibolone Protection
    Cabezas R, Martin-Jiménez C, Zuluaga M, Pinzón A, Barreto GE, González J
    International journal of molecular sciences · 6 cites · DOI · PMC
  44. The Serum and Fecal Metabolomic Profiles of Growing Kittens Treated with Amoxicillin/Clavulanic Acid or Doxycycline
    Stavroulaki EM, Suchodolski JS, Pilla R, Fosgate GT, Sung CH, Lidbury J, Steiner JM, Xenoulis PG
    Animals : an open access journal from MDPI · 6 cites · DOI · PMC
  45. Effects of Milk Polar Lipids on DSS-Induced Colitis Severity Are Dependent on Dietary Fat Content
    Garcia C, Anto L, Blesso CN
    Nutrients · 5 cites · DOI · PMC
  46. AIBP Regulates Metabolism of Ketone and Lipids but Not Mitochondrial Respiration
    Kim JD, Zhou T, Zhang A, Li S, Gupte AA, Hamilton DJ, Fang L
    Cells · 5 cites · DOI · PMC
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    Maitra N, Hammer S, Kjerfve C, Bankaitis VA, Polymenis M
    Genetics · 5 cites · DOI · PMC
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    Lilley LM, Sanche S, Moore SC, Salemi MR, Vu D, Iyer S, Hengartner NW, Mukundan H
    Scientific reports · 5 cites · DOI · PMC
  49. Pharmacometabolomics Profiling of Preterm Infants Validates Patterns of Metabolism Associated With Response to Dexamethasone Treatment for Bronchopulmonary Dysplasia
    Stockard B, Gauldin C, Truog W, Lewis T
    Frontiers in pediatrics · 4 cites · DOI · PMC
  50. Agmatine Administration Effects on Equine Gastric Ulceration and Lameness
    Taguchi T, Morales Yniguez FJ, Takawira C, Andrews FM, Lopez MJ
    Journal of clinical medicine · 3 cites · DOI · PMC
  51. Changes in the Fecal Metabolome Accompany an Increase in Aberrant Crypt Foci in the Colon of C57BL/6 Mice Fed with a High-Fat Diet
    Zeng H, Safratowich BD, Cheng WH, Magnuson AD, Picklo MJ
    Biomedicines · 3 cites · DOI · PMC
  52. The effect of circular soil biosolarization treatment on the physiology, metabolomics, and microbiome of tomato plants under certain abiotic stresses
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    Frontiers in plant science · 3 cites · DOI · PMC
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    Marron MM, Orwoll ES, Cawthon PM, Lane NE, Newman AB, Cauley JA, Osteoporotic Fractures in Men (MrOS) Study Research Group
    International journal of molecular sciences · 3 cites · DOI · PMC
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    Jumpa T, Beckles DM, Songsri P, Pattanagul K, Pattanagul W
    Plants (Basel, Switzerland) · 3 cites · DOI · PMC
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    Yan L, Rust BM, Sundaram S, Picklo MJ, Bukowski MR
    Nutrition and metabolic insights · 1 cite · DOI · PMC
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2021 (59)

  1. Infection trains the host for microbiota-enhanced resistance to pathogens
    Stacy A, Andrade-Oliveira V, McCulloch JA, Hild B, Oh JH, Perez-Chaparro PJ, Sim CK, Lim AI, … et al. (14 authors)
    Cell · 200 cites · DOI · PMC
  2. Restoration of energy homeostasis by SIRT6 extends healthy lifespan
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    Nature communications · 170 cites · DOI · PMC
  3. A cross-sectional study of functional and metabolic changes during aging through the lifespan in male mice
    Petr MA, Alfaras I, Krawcyzk M, Bair WN, Mitchell SJ, Morrell CH, Studenski SA, Price NL, … et al. (16 authors)
    eLife · 76 cites · DOI · PMC
  4. Age and sex are associated with the plasma lipidome: findings from the GOLDN study
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    Lipids in health and disease · 72 cites · DOI · PMC
  5. The modified mitochondrial outer membrane carrier MTCH2 links mitochondrial fusion to lipogenesis
    Labbé K, Mookerjee S, Le Vasseur M, Gibbs E, Lerner C, Nunnari J
    The Journal of cell biology · 65 cites · DOI · PMC
  6. Dietary Management of Heart Failure: DASH Diet and Precision Nutrition Perspectives
    Wickman BE, Enkhmaa B, Ridberg R, Romero E, Cadeiras M, Meyers F, Steinberg F
    Nutrients · 63 cites · DOI · PMC
  7. Transient phases of OXPHOS inhibitor resistance reveal underlying metabolic heterogeneity in single cells
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    Cell metabolism · 42 cites · DOI · PMC
  8. Butyrate producing microbiota are reduced in chronic kidney diseases
    Gao B, Jose A, Alonzo-Palma N, Malik T, Shankaranarayanan D, Regunathan-Shenk R, Raj DS
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  9. Potential Therapeutic Applications of Pulmonary Surfactant Lipids in the Host Defence Against Respiratory Viral Infections
    Ji J, Sun L, Luo Z, Zhang Y, Xianzheng W, Liao Y, Tong X, Shan J
    Frontiers in immunology · 40 cites · DOI · PMC
  10. Using Estrogenic Activity and Nontargeted Chemical Analysis to Identify Contaminants in Sewage Sludge
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    Environmental science & technology · 36 cites · DOI · PMC
  11. The metabolic footprint of Clostridia and Erysipelotrichia reveals their role in depleting sugar alcohols in the cecum
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    Microbiome · 35 cites · DOI · PMC
  12. Glucose-6-phosphate dehydrogenase deficiency contributes to metabolic abnormality and pulmonary hypertension
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  14. Comprehensive Volatilome and Metabolome Signatures of Colorectal Cancer in Urine: A Systematic Review and Meta-Analysis
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  15. Salivary Metabolites are Promising Non-Invasive Biomarkers of Hepatocellular Carcinoma and Chronic Liver Disease
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  16. Replacing Animal Protein with Soy-Pea Protein in an "American Diet" Controls Murine Crohn Disease-Like Ileitis Regardless of Firmicutes: Bacteroidetes Ratio
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  17. Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetes
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    Genome biology · 30 cites · DOI · PMC
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  20. Intergenerational trauma transmission is associated with brain metabotranscriptome remodeling and mitochondrial dysfunction
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  21. Prediction of the development of islet autoantibodies through integration of environmental, genetic, and metabolic markers
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  22. Dysregulation of mannose-6-phosphate-dependent cholesterol homeostasis in acinar cells mediates pancreatitis
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  25. Plasma Metabolome Normalization in Rheumatoid Arthritis Following Initiation of Methotrexate and the Identification of Metabolic Biomarkers of Efficacy
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  26. Diet composition influences the metabolic benefits of short cycles of very low caloric intake
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  28. Deletion of the diabetes candidate gene Slc16a13 in mice attenuates diet-induced ectopic lipid accumulation and insulin resistance
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  29. Mitochondrial health is enhanced in rats with higher vs. lower intrinsic exercise capacity and extended lifespan
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  30. A ketogenic diet impacts markers of mitochondrial mass in a tissue specific manner in aged mice
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  31. Transcriptomic and metabolomic characterization of post-hatch metabolic reprogramming during hepatic development in the chicken
    Van Every HA, Schmidt CJ
    BMC genomics · 17 cites · DOI · PMC
  32. Combined nicotinamide N-methyltransferase inhibition and reduced-calorie diet normalizes body composition and enhances metabolic benefits in obese mice
    Sampson CM, Dimet AL, Neelakantan H, Ogunseye KO, Stevenson HL, Hommel JD, Watowich SJ
    Scientific reports · 17 cites · DOI · PMC
  33. Quantification of Nonpersistent Pesticides in Small Volumes of Human Breast Milk with Ultrahigh Performance Liquid Chromatography Coupled to Tandem Mass Spectrometry
    Pedersen TL, Smilowitz JT, Winter CK, Emami S, Schmidt RJ, Bennett DH, Hertz-Picciotto I, Taha AY
    Journal of agricultural and food chemistry · 16 cites · DOI · PMC
  34. Gastric Metabolomics Detects Helicobacter pylori Correlated Loss of Numerous Metabolites in Both the Corpus and Antrum
    Keilberg D, Steele N, Fan S, Yang C, Zavros Y, Ottemann KM
    Infection and immunity · 16 cites · DOI · PMC
  35. Characterizing the Effects of Calcium and Prebiotic Fiber on Human Gut Microbiota Composition and Function Using a Randomized Crossover Design-A Feasibility Study
    Yoon LS, Michels KB
    Nutrients · 15 cites · DOI · PMC
  36. Atg32-dependent mitophagy sustains spermidine and nitric oxide required for heat-stress tolerance in Saccharomycescerevisiae
    Kaur J, Goldsmith J, Tankka A, Bustamante Eguiguren S, Gimenez AA, Vick L, Debnath J, Vlahakis A
    Journal of cell science · 14 cites · DOI · PMC
  37. ATP Drives Efficient Terpene Biosynthesis in Marine Thraustochytrids
    Zhang A, Mernitz K, Wu C, Xiong W, He Y, Wang G, Wang X
    mBio · 14 cites · DOI · PMC
  38. Fenofibrate promotes PPARα-targeted recovery of the intestinal epithelial barrier at the host-microbe interface in dogs with diabetes mellitus
    Crakes KR, Pires J, Quach N, Ellis-Reis RE, Greathouse R, Chittum KA, Steiner JM, Pesavento P, … et al. (11 authors)
    Scientific reports · 14 cites · DOI · PMC
  39. HIF-1α promotes cellular growth in lymphatic endothelial cells exposed to chronically elevated pulmonary lymph flow
    Boehme JT, Morris CJ, Chiacchia SR, Gong W, Wu KY, Kameny RJ, Raff GW, Fineman JR, … et al. (10 authors)
    Scientific reports · 14 cites · DOI · PMC
  40. Plasma Metabolome and Circulating Vitamins Stratified Onset Age of an Initial Islet Autoantibody and Progression to Type 1 Diabetes: The TEDDY Study
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    Diabetes · 13 cites · DOI · PMC
  41. Two UGT84A Family Glycosyltransferases Regulate Phenol, Flavonoid, and Tannin Metabolism in Juglans regia (English Walnut)
    Saxe HJ, Horibe T, Balan B, Butterfield TS, Feinberg NG, Zabaneh CM, Jacobson AE, Dandekar AM
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    He Y, Liu Y, Ji P
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  43. Lipid-Based Nutrient Supplementation Increases High-Density Lipoprotein (HDL) Cholesterol Efflux Capacity and Is Associated with Changes in the HDL Glycoproteome in Children
    Hong BV, Zhu C, Wong M, Sacchi R, Rhodes CH, Kang JW, Arnold CD, Adu-Afarwuah S, … et al. (13 authors)
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  44. Blood Plasma Biomarkers for Woody Breast Disease in Commercial Broilers
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  45. Serum Acylglycerols Inversely Associate with Muscle Oxidative Capacity in Severe COPD
    Li R, Adami A, Chang CC, Tseng CH, Hsiai TK, Rossiter HB
    Medicine and science in sports and exercise · 10 cites · DOI · PMC
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    Rosa F, Matazel KS, Elolimy AA, Adams SH, Bowlin A, Williams KD, Bode L, Yeruva L
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    Salamoun YM, Polireddy K, Cho YK, Medcalf MR, Funk RS
    Metabolites · 6 cites · DOI · PMC
  50. Metabolomic Profiling Identifies Exogenous and Microbiota-Derived Metabolites as Markers of Methotrexate Efficacy in Juvenile Idiopathic Arthritis
    Funk RS, Becker ML
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    Chaudhary P, Velkoska E, Wainford RD
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    Yan L, Sundaram S, Rust BM, Picklo MJ, Bukowski MR
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    Geriatrics (Basel, Switzerland) · 5 cites · DOI · PMC
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2020 (45)

  1. Dysbiosis-Induced Secondary Bile Acid Deficiency Promotes Intestinal Inflammation
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    Cell host & microbe · 696 cites · DOI · PMC
  2. Undermining Glutaminolysis Bolsters Chemotherapy While NRF2 Promotes Chemoresistance in KRAS-Driven Pancreatic Cancers
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    Cancer research · 224 cites · DOI · PMC
  3. Effects of metronidazole on the fecal microbiome and metabolome in healthy dogs
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    Journal of veterinary internal medicine · 166 cites · DOI · PMC
  4. Bmal1 integrates mitochondrial metabolism and macrophage activation
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    eLife · 151 cites · DOI · PMC
  5. Untangling Determinants of Enhanced Health and Lifespan through a Multi-omics Approach in Mice
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  6. Hypoxic Regulation of Mitochondrial Metabolism and Mitophagy in Nucleus Pulposus Cells Is Dependent on HIF-1α-BNIP3 Axis
    Madhu V, Boneski PK, Silagi E, Qiu Y, Kurland I, Guntur AR, Shapiro IM, Risbud MV
    Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 120 cites · DOI · PMC
  7. Glycogen Metabolism Supports Photosynthesis Start through the Oxidative Pentose Phosphate Pathway in Cyanobacteria
    Shinde S, Zhang X, Singapuri SP, Kalra I, Liu X, Morgan-Kiss RM, Wang X
    Plant physiology · 73 cites · DOI · PMC
  8. Vancomycin prevents fermentable fiber-induced liver cancer in mice with dysbiotic gut microbiota
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    Gut microbes · 63 cites · DOI · PMC
  9. Biological sex and DNA repair deficiency drive Alzheimer's disease via systemic metabolic remodeling and brain mitochondrial dysfunction
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  10. Effect of very low-protein diets supplemented with branched-chain amino acids on energy balance, plasma metabolomics and fecal microbiome of pigs
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  11. Adiponectin and related C1q/TNF-related proteins bind selectively to anionic phospholipids and sphingolipids
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    Proceedings of the National Academy of Sciences of the United States of America · 39 cites · DOI · PMC
  12. Low Protein-High Carbohydrate Diets Alter Energy Balance, Gut Microbiota Composition and Blood Metabolomics Profile in Young Pigs
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    Scientific reports · 39 cites · DOI · PMC
  13. Abundances of transcripts, proteins, and metabolites in the cell cycle of budding yeast reveal coordinate control of lipid metabolism
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    Molecular biology of the cell · 36 cites · DOI · PMC
  14. The gut microbiota and Bergmann's rule in wild house mice
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    Molecular ecology · 35 cites · DOI · PMC
  15. Neonatal Mouse Gut Metabolites Influence Cryptosporidium parvum Infection in Intestinal Epithelial Cells
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    mBio · 32 cites · DOI · PMC
  16. Translational control of one-carbon metabolism underpins ribosomal protein phenotypes in cell division and longevity
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  17. Identification of Metabolic Alterations in Breast Cancer Using Mass Spectrometry-Based Metabolomic Analysis
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    Metabolites · 29 cites · DOI · PMC
  18. New markers for sepsis caused by Pseudomonas aeruginosa during burn infection
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    Metabolomics : Official journal of the Metabolomic Society · 26 cites · DOI · PMC
  19. Chlamydomonas sp. UWO 241 Exhibits High Cyclic Electron Flow and Rewired Metabolism under High Salinity
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  20. TREML4 Promotes Inflammatory Programs in Human and Murine Macrophages and Alters Atherosclerosis Lesion Composition in the Apolipoprotein E Deficient Mouse
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  21. Role of root exudates on assimilation of phosphorus in young and old Arabidopsis thaliana plants
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  22. Organic selenium supplement partially alleviated diquat-induced oxidative insults and hepatic metabolic stress in nursery pigs
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  23. Elevated Serum Amino Acids Induce a Subpopulation of Alpha Cells to Initiate Pancreatic Neuroendocrine Tumor Formation
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  24. The Rho-Dependent Transcription Termination Is Involved in Broad-Spectrum Antibiotic Susceptibility in Escherichia coli
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  25. Deciphering rice metabolic flux reprograming under salinity stress via in silico metabolic modeling
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  27. Metabolomic and transcriptomic signatures of prenatal excessive methionine support nature rather than nurture in schizophrenia pathogenesis
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  28. The parotid secretory protein BPIFA2 is a salivary surfactant that affects lipopolysaccharide action
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    Experimental physiology · 16 cites · DOI · PMC
  29. Effects of Arsenic on Trichloroethene-Dechlorination Activities of Dehalococcoides mccartyi 195
    Gushgari-Doyle S, Alvarez-Cohen L
    Environmental science & technology · 16 cites · DOI · PMC
  30. Interference control in working memory: Evidence for discriminant validity between removal and inhibition tasks
    Rey-Mermet A, Singh KA, Gignac GE, Brydges CR, Ecker UKH
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  32. Identification of Metabolite and Lipid Profiles in a Segregating Peach Population Associated with Mealiness in Prunus persica (L.) Batsch
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  33. Metabolomic Profiling to Identify Molecular Biomarkers of Cellular Response to Methotrexate In Vitro
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    Clinical and translational science · 13 cites · DOI · PMC
  34. Impact of Daily Preventive Zinc or Therapeutic Zinc Supplementation for Diarrhea on Plasma Biomarkers of Environmental Enteric Dysfunction among Rural Laotian Children: A Randomized Controlled Trial
    Wessells KR, Hinnouho GM, Barffour MA, Arnold CD, Kounnavong S, Kewcharoenwong C, Lertmemongkolchai G, Schuster GU, … et al. (10 authors)
    The American journal of tropical medicine and hygiene · 12 cites · DOI · PMC
  35. Assessment of soluble epoxide hydrolase activity in vivo: A metabolomic approach
    Stefanovski D, Shih PB, Hammock BD, Watanabe RM, Youn JH
    Prostaglandins & other lipid mediators · 11 cites · DOI · PMC
  36. Zika Virus Infection Results in Biochemical Changes Associated With RNA Editing, Inflammatory and Antiviral Responses in Aedes albopictus
    Onyango MG, Attardo GM, Kelly ET, Bialosuknia SM, Stout J, Banker E, Kuo L, Ciota AT, … et al. (9 authors)
    Frontiers in microbiology · 11 cites · DOI · PMC
  37. Water Deficit Affects the Growth and Leaf Metabolite Composition of Young Loquat Plants
    Gugliuzza G, Talluto G, Martinelli F, Farina V, Lo Bianco R
    Plants (Basel, Switzerland) · 11 cites · DOI · PMC
  38. Antioxidant-Conjugated Peptide Attenuated Metabolic Reprogramming in Pulmonary Hypertension
    Varghese MV, Niihori M, Eccles CA, Kurdyukov S, James J, Rafikova O, Rafikov R
    Antioxidants (Basel, Switzerland) · 10 cites · DOI · PMC
  39. Neonatal Diet Impacts the Large Intestine Luminal Metabolome at Weaning and Post-Weaning in Piglets Fed Formula or Human Milk
    Rosa F, Matazel KS, Bowlin AK, Williams KD, Elolimy AA, Adams SH, Bode L, Yeruva L
    Frontiers in immunology · 9 cites · DOI · PMC
  40. Early Infant Formula Feeding Impacts Urinary Metabolite Profile at 3 Months of Age
    Rosa F, Mercer KE, Lin H, Sims CR, Pack LM, Goode G, Badger T, Andres A, … et al. (9 authors)
    Nutrients · 8 cites · DOI · PMC
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    Pinto-Irish K, Coba de la Peña T, Ostria-Gallardo E, Ibáñez C, Briones V, Vergara A, Alvarez R, Castro C, … et al. (11 authors)
    BMC plant biology · 7 cites · DOI · PMC
  42. Cholecystectomy - a potential selection bias in studies assessing the metabolic effects of bariatric surgeries
    Machado NM, Cardinelli CS, Shen T, Santo MA, Torrinhas RS, Waitzberg DL
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  43. JARID1a Ablation in the Liver Alters Systemic Metabolism and Adaptation to Feeding
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2019 (40)

  1. GDF15 Is an Inflammation-Induced Central Mediator of Tissue Tolerance
    Luan HH, Wang A, Hilliard BK, Carvalho F, Rosen CE, Ahasic AM, Herzog EL, Kang I, … et al. (14 authors)
    Cell · 460 cites · DOI · PMC
  2. Association of Altered Liver Enzymes With Alzheimer Disease Diagnosis, Cognition, Neuroimaging Measures, and Cerebrospinal Fluid Biomarkers
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  3. Metabolic Reprogramming in Astrocytes Distinguishes Region-Specific Neuronal Susceptibility in Huntington Mice
    Polyzos AA, Lee DY, Datta R, Hauser M, Budworth H, Holt A, Mihalik S, Goldschmidt P, … et al. (15 authors)
    Cell metabolism · 131 cites · DOI · PMC
  4. The Consortium of Metabolomics Studies (COMETS): Metabolomics in 47 Prospective Cohort Studies
    Yu B, Zanetti KA, Temprosa M, Albanes D, Appel N, Barrera CB, Ben-Shlomo Y, Boerwinkle E, … et al. (74 authors)
    American journal of epidemiology · 90 cites · DOI · PMC
  5. Muscle-generated BDNF is a sexually dimorphic myokine that controls metabolic flexibility
    Yang X, Brobst D, Chan WS, Tse MCL, Herlea-Pana O, Ahuja P, Bi X, Zaw AM, … et al. (25 authors)
    Science signaling · 83 cites · DOI · PMC
  6. Exploratory metabolomics of metabolic syndrome: A status report
    Lent-Schochet D, McLaughlin M, Ramakrishnan N, Jialal I
    World journal of diabetes · 76 cites · DOI · PMC
  7. MAGE cancer-testis antigens protect the mammalian germline under environmental stress
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    Science advances · 68 cites · DOI · PMC
  8. Serum Metabolomics Identifies Altered Bioenergetics, Signaling Cascades in Parallel with Exposome Markers in Crohn's Disease
    Lai Y, Xue J, Liu CW, Gao B, Chi L, Tu P, Lu K, Ru H
    Molecules (Basel, Switzerland) · 60 cites · DOI · PMC
  9. Mitochondrial oxidative stress-induced transcript variants of ATF3 mediate lipotoxic brain microvascular injury
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    Free radical biology & medicine · 49 cites · DOI · PMC
  10. Obesity leads to distinct metabolomic signatures in follicular fluid of women undergoing in vitro fertilization
    Ruebel ML, Piccolo BD, Mercer KE, Pack L, Moutos D, Shankar K, Andres A
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  13. Allopregnanolone Treatment Improves Plasma Metabolomic Profile Associated with GABA Metabolism in Fragile X-Associated Tremor/Ataxia Syndrome: a Pilot Study
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  14. ADCK2 Haploinsufficiency Reduces Mitochondrial Lipid Oxidation and Causes Myopathy Associated with CoQ Deficiency
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    Metabolites · 32 cites · DOI · PMC
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  24. Pseudomonas aeruginosa Alters Its Transcriptome Related to Carbon Metabolism and Virulence as a Possible Survival Strategy in Blood from Trauma Patients
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  32. Metabolomic Analysis Reveals Contributions of Citric and Citramalic Acids to Rare Earth Bioleaching by a Paecilomyces Fungus
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  33. Impact of the Mode of Extraction on the Lipidomic Profile of Oils Obtained from Selected Amazonian Fruits
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  36. Repeated administration of the NSAID meloxicam alters the plasma and urine lipidome
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  37. Untargeted metabolomic profiling of urine from healthy dogs and dogs with chronic hepatic disease
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  38. Elimination of human folypolyglutamate synthetase alters programming and plasticity of somatic cells
    Srivastava AC, Thompson YG, Singhal J, Stellern J, Srivastava A, Du J, O'Connor TR, Riggs AD
    FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 7 cites · DOI · PMC
  39. 3019 Metabolomic Markers of Methotrexate Response in Juvenile Idiopathic Arthritis
    Funk RS, Becker M
    Journal of Clinical and Translational Science · DOI · PMC
  40. Impact of Preventive and Therapeutic Zinc Supplements on Citrulline Concentration and the kynurenine: tryptophan Ratio Among Lao Children: A Randomized Controlled Trial (OR07-02-19)
    Wessells KR, Hinnouho GM, Barffour M, Sayasone S, Arnold C, Kounnavong S, Brown K, Hess S
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2018 (42)

  1. Gut microbiome-mediated bile acid metabolism regulates liver cancer via NKT cells
    Ma C, Han M, Heinrich B, Fu Q, Zhang Q, Sandhu M, Agdashian D, Terabe M, … et al. (23 authors)
    Science (New York, N.Y.) · 1252 cites · DOI · PMC
  2. Dysregulated Microbial Fermentation of Soluble Fiber Induces Cholestatic Liver Cancer
    Singh V, Yeoh BS, Chassaing B, Xiao X, Saha P, Aguilera Olvera R, Lapek JD Jr, Zhang L, … et al. (20 authors)
    Cell · 423 cites · DOI · PMC
  3. Root exudates drive the soil-borne legacy of aboveground pathogen infection
    Yuan J, Zhao J, Wen T, Zhao M, Li R, Goossens P, Huang Q, Bai Y, … et al. (12 authors)
    Microbiome · 399 cites · DOI · PMC
  4. Tumour-elicited neutrophils engage mitochondrial metabolism to circumvent nutrient limitations and maintain immune suppression
    Rice CM, Davies LC, Subleski JJ, Maio N, Gonzalez-Cotto M, Andrews C, Patel NL, Palmieri EM, … et al. (14 authors)
    Nature communications · 306 cites · DOI · PMC
  5. Nicotinamide Improves Aspects of Healthspan, but Not Lifespan, in Mice
    Mitchell SJ, Bernier M, Aon MA, Cortassa S, Kim EY, Fang EF, Palacios HH, Ali A, … et al. (23 authors)
    Cell metabolism · 278 cites · DOI · PMC
  6. The metabolite BH4 controls T cell proliferation in autoimmunity and cancer
    Cronin SJF, Seehus C, Weidinger A, Talbot S, Reissig S, Seifert M, Pierson Y, McNeill E, … et al. (41 authors)
    Nature · 259 cites · DOI · PMC
  7. Salt-Responsive Metabolite, β-Hydroxybutyrate, Attenuates Hypertension
    Chakraborty S, Galla S, Cheng X, Yeo JY, Mell B, Singh V, Yeoh B, Saha P, … et al. (11 authors)
    Cell reports · 164 cites · DOI · PMC
  8. Long noncoding RNA H19 interacts with polypyrimidine tract-binding protein 1 to reprogram hepatic lipid homeostasis
    Liu C, Yang Z, Wu J, Zhang L, Lee S, Shin DJ, Tran M, Wang L
    Hepatology (Baltimore, Md.) · 156 cites · DOI · PMC
  9. Design of synthetic bacterial communities for predictable plant phenotypes
    Herrera Paredes S, Gao T, Law TF, Finkel OM, Mucyn T, Teixeira PJPL, Salas González I, Feltcher ME, … et al. (14 authors)
    PLoS biology · 155 cites · DOI · PMC
  10. The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis
    Wandro S, Osborne S, Enriquez C, Bixby C, Arrieta A, Whiteson K
    mSphere · 126 cites · DOI · PMC
  11. Metabolic reprogramming of human CD8(+) memory T cells through loss of SIRT1
    Jeng MY, Hull PA, Fei M, Kwon HS, Tsou CL, Kasler H, Ng CP, Gordon DE, … et al. (12 authors)
    The Journal of experimental medicine · 109 cites · DOI · PMC
  12. Obesity treatment by epigallocatechin-3-gallate-regulated bile acid signaling and its enriched Akkermansia muciniphila
    Sheng L, Jena PK, Liu HX, Hu Y, Nagar N, Bronner DN, Settles ML, Bäumler AJ, … et al. (9 authors)
    FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 100 cites · DOI · PMC
  13. Male lifespan extension with 17-α estradiol is linked to a sex-specific metabolomic response modulated by gonadal hormones in mice
    Garratt M, Lagerborg KA, Tsai YM, Galecki A, Jain M, Miller RA
    Aging cell · 56 cites · DOI · PMC
  14. Reprogrammed lipid metabolism in bladder cancer with cisplatin resistance
    Lee MY, Yeon A, Shahid M, Cho E, Sairam V, Figlin R, Kim KH, Kim J
    Oncotarget · 53 cites · DOI · PMC
  15. Reduced cognitive function, increased blood-brain-barrier transport and inflammatory responses, and altered brain metabolites in LDLr -/-and C57BL/6 mice fed a western diet
    Rutkowsky JM, Lee LL, Puchowicz M, Golub MS, Befroy DE, Wilson DW, Anderson S, Cline G, … et al. (13 authors)
    PloS one · 49 cites · DOI · PMC
  16. Metabolic and molecular framework for the enhancement of endurance by intermittent food deprivation
    Marosi K, Moehl K, Navas-Enamorado I, Mitchell SJ, Zhang Y, Lehrmann E, Aon MA, Cortassa S, … et al. (10 authors)
    FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 45 cites · DOI · PMC
  17. Arginine reprogramming in ADPKD results in arginine-dependent cystogenesis
    Trott JF, Hwang VJ, Ishimaru T, Chmiel KJ, Zhou JX, Shim K, Stewart BJ, Mahjoub MR, … et al. (12 authors)
    American journal of physiology. Renal physiology · 44 cites · DOI · PMC
  18. Integrated Serum and Fecal Metabolomics Study of Collagen-Induced Arthritis Rats and the Therapeutic Effects of the Zushima Tablet
    Shan J, Peng L, Qian W, Xie T, Kang A, Gao B, Di L
    Frontiers in pharmacology · 44 cites · DOI · PMC
  19. Delaying chloroplast turnover increases water-deficit stress tolerance through the enhancement of nitrogen assimilation in rice
    Sade N, Umnajkitikorn K, Rubio Wilhelmi MDM, Wright M, Wang S, Blumwald E
    Journal of experimental botany · 37 cites · DOI · PMC
  20. Overexpression of CYB5R3 and NQO1, two NAD(+) -producing enzymes, mimics aspects of caloric restriction
    Diaz-Ruiz A, Lanasa M, Garcia J, Mora H, Fan F, Martin-Montalvo A, Di Francesco A, Calvo-Rubio M, … et al. (16 authors)
    Aging cell · 36 cites · DOI · PMC
  21. Molecular Profiling of Pierce's Disease Outlines the Response Circuitry of Vitis vinifera to Xylella fastidiosa Infection
    Zaini PA, Nascimento R, Gouran H, Cantu D, Chakraborty S, Phu M, Goulart LR, Dandekar AM
    Frontiers in plant science · 35 cites · DOI · PMC
  22. Recurrent inhibition of mitochondrial complex III induces chronic pulmonary vasoconstriction and glycolytic switch in the rat lung
    Rafikova O, Srivastava A, Desai AA, Rafikov R, Tofovic SP
    Respiratory research · 31 cites · DOI · PMC
  23. Metabolomics Based Identification of SIRT5 and Protein Kinase C Epsilon Regulated Pathways in Brain
    Koronowski KB, Khoury N, Morris-Blanco KC, Stradecki-Cohan HM, Garrett TJ, Perez-Pinzon MA
    Frontiers in neuroscience · 29 cites · DOI · PMC
  24. Individual susceptibility to arsenic-induced diseases: the role of host genetics, nutritional status, and the gut microbiome
    Chi L, Gao B, Tu P, Liu CW, Xue J, Lai Y, Ru H, Lu K
    Mammalian genome : official journal of the International Mammalian Genome Society · 28 cites · DOI · PMC
  25. Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa
    Phan J, Gallagher T, Oliver A, England WE, Whiteson K
    FEMS microbiology letters · 27 cites · DOI · PMC
  26. Human-like Cmah inactivation in mice increases running endurance and decreases muscle fatigability: implications for human evolution
    Okerblom J, Fletes W, Patel HH, Schenk S, Varki A, Breen EC
    Proceedings. Biological sciences · 23 cites · DOI · PMC
  27. Trichoderma gamsii affected herbivore feeding behaviour on Arabidopsis thaliana by modifying the leaf metabolome and phytohormones
    Zhou D, Huang XF, Guo J, Dos-Santos ML, Vivanco JM
    Microbial biotechnology · 21 cites · DOI · PMC
  28. Menthol, a unique urinary volatile compound, is associated with chronic inflammation in interstitial cystitis
    Shahid M, Lee MY, Yeon A, Cho E, Sairam V, Valdiviez L, You S, Kim J
    Scientific reports · 21 cites · DOI · PMC
  29. Innovations in asthma therapy: is there a role for inhaled statins?
    Zeki AA, Elbadawi-Sidhu M
    Expert review of respiratory medicine · 20 cites · DOI · PMC
  30. Explaining combinatorial effects of mycotoxins Deoxynivalenol and Zearalenone in mice with urinary metabolomic profiling
    Ji J, Zhu P, Blaženović I, Cui F, Gholami M, Sun J, Habimana J, Zhang Y, … et al. (9 authors)
    Scientific reports · 20 cites · DOI · PMC
  31. Diabetes-associated alterations in the cecal microbiome and metabolome are independent of diet or environment in the UC Davis Type 2 Diabetes Mellitus Rat model
    Piccolo BD, Graham JL, Stanhope KL, Nookaew I, Mercer KE, Chintapalli SV, Wankhade UD, Shankar K, … et al. (10 authors)
    American journal of physiology. Endocrinology and metabolism · 19 cites · DOI · PMC
  32. Flow-Responsive Vascular Endothelial Growth Factor Receptor-Protein Kinase C Isoform Epsilon Signaling Mediates Glycolytic Metabolites for Vascular Repair
    Baek KI, Li R, Jen N, Choi H, Kaboodrangi A, Ping P, Liem D, Beebe T, … et al. (9 authors)
    Antioxidants & redox signaling · 19 cites · DOI · PMC
  33. Omeprazole Minimally Alters the Fecal Microbial Community in Six Cats: A Pilot Study
    Schmid SM, Suchodolski JS, Price JM, Tolbert MK
    Frontiers in veterinary science · 18 cites · DOI · PMC
  34. Metabolomics and Precision Medicine in Trauma: The State of the Field
    Jayaraman SP, Anand RJ, DeAntonio JH, Mangino M, Aboutanos MB, Kasirajan V, Ivatury RR, Valadka AB, … et al. (16 authors)
    Shock (Augusta, Ga.) · 17 cites · DOI · PMC
  35. Feline urine metabolomic signature: characterization of low-molecular-weight substances in urine from domestic cats
    Rivera-Vélez SM, Villarino NF
    Journal of feline medicine and surgery · 13 cites · DOI · PMC
  36. MeCP2 isoform e1 mutant mice recapitulate motor and metabolic phenotypes of Rett syndrome
    Vogel Ciernia A, Yasui DH, Pride MC, Durbin-Johnson B, Noronha AB, Chang A, Knotts TA, Rutkowsky JR, … et al. (11 authors)
    Human molecular genetics · 12 cites · DOI · PMC
  37. The serum metabolomics signature of type 2 diabetes is obscured in Alzheimer's disease
    Morris JK, Piccolo BD, Shankar K, Thyfault JP, Adams SH
    American journal of physiology. Endocrinology and metabolism · 10 cites · DOI · PMC
  38. Celecoxib use and circulating oxylipins in a colon polyp prevention trial
    Martinez JA, Yang J, Wertheim BC, Roe DJ, Schriewer A, Lance P, Alberts DS, Hammock BD, … et al. (9 authors)
    PloS one · 7 cites · DOI · PMC
  39. Bauerenol Acetate, the Pentacyclic Triterpenoid from Tabernaemontana longipes, is an Antitrypanosomal Agent
    Carothers S, Nyamwihura R, Collins J, Zhang H, Park H, Setzer WN, Ogungbe IV
    Molecules (Basel, Switzerland) · 7 cites · DOI · PMC
  40. 2018 ACVIM Forum Research Abstract Program. Seattle, Washington, June 14 - 15, 2018
    Journal of veterinary internal medicine · 6 cites · DOI · PMC
  41. Effects of Monolaurin on Oral Microbe-Host Transcriptome and Metabolome
    Silva VO, Pereira LJ, Pasetto S, da Silva MP, Meyers JC, Murata RM
    Frontiers in microbiology · 5 cites · DOI · PMC
  42. Fasting and postprandial soluble epoxide hydrolase-associated eicosanoids of remitted patients with eating disorder
    Yang J, Shih PB
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2017 (26)

  1. Honeybee gut microbiota promotes host weight gain via bacterial metabolism and hormonal signaling
    Zheng H, Powell JE, Steele MI, Dietrich C, Moran NA
    Proceedings of the National Academy of Sciences of the United States of America · 463 cites · DOI · PMC
  2. Biomonitoring in the Era of the Exposome
    Dennis KK, Marder E, Balshaw DM, Cui Y, Lynes MA, Patti GJ, Rappaport SM, Shaughnessy DT, … et al. (10 authors)
    Environmental health perspectives · 160 cites · DOI · PMC
  3. Global metabolic rewiring for improved CO(2) fixation and chemical production in cyanobacteria
    Kanno M, Carroll AL, Atsumi S
    Nature communications · 135 cites · DOI · PMC
  4. The Effects of an Environmentally Relevant Level of Arsenic on the Gut Microbiome and Its Functional Metagenome
    Chi L, Bian X, Gao B, Tu P, Ru H, Lu K
    Toxicological sciences : an official journal of the Society of Toxicology · 105 cites · DOI · PMC
  5. Arginine Improves pH Homeostasis via Metabolism and Microbiome Modulation
    Agnello M, Cen L, Tran NC, Shi W, McLean JS, He X
    Journal of dental research · 72 cites · DOI · PMC
  6. Neuronal SIRT1 (Silent Information Regulator 2 Homologue 1) Regulates Glycolysis and Mediates Resveratrol-Induced Ischemic Tolerance
    Koronowski KB, Khoury N, Saul I, Loris ZB, Cohan CH, Stradecki-Cohan HM, Dave KR, Young JI, … et al. (9 authors)
    Stroke · 70 cites · DOI · PMC
  7. A Single Regulator Mediates Strategic Switching between Attachment/Spread and Growth/Virulence in the Plant Pathogen Ralstonia solanacearum
    Khokhani D, Lowe-Power TM, Tran TM, Allen C
    mBio · 70 cites · DOI · PMC
  8. Cyclooxygenase-derived proangiogenic metabolites of epoxyeicosatrienoic acids
    Rand AA, Barnych B, Morisseau C, Cajka T, Lee KSS, Panigrahy D, Hammock BD
    Proceedings of the National Academy of Sciences of the United States of America · 68 cites · DOI · PMC
  9. Health benefits of late-onset metformin treatment every other week in mice
    Alfaras I, Mitchell SJ, Mora H, Lugo DR, Warren A, Navas-Enamorado I, Hoffmann V, Hine C, … et al. (13 authors)
    NPJ aging and mechanisms of disease · 51 cites · DOI · PMC
  10. Redox crisis underlies conditional light-dark lethality in cyanobacterial mutants that lack the circadian regulator, RpaA
    Diamond S, Rubin BE, Shultzaberger RK, Chen Y, Barber CD, Golden SS
    Proceedings of the National Academy of Sciences of the United States of America · 47 cites · DOI · PMC
  11. Cardiac Insulin Signaling Regulates Glycolysis Through Phosphofructokinase 2 Content and Activity
    Bockus LB, Matsuzaki S, Vadvalkar SS, Young ZT, Giorgione JR, Newhardt MF, Kinter M, Humphries KM
    Journal of the American Heart Association · 46 cites · DOI · PMC
  12. The steroid metabolome in women with premenstrual dysphoric disorder during GnRH agonist-induced ovarian suppression: effects of estradiol and progesterone addback
    Nguyen TV, Reuter JM, Gaikwad NW, Rotroff DM, Kucera HR, Motsinger-Reif A, Smith CP, Nieman LK, … et al. (11 authors)
    Translational psychiatry · 37 cites · DOI · PMC
  13. Methods for studying the metabolic basis of Drosophila development
    Li H, Tennessen JM
    Wiley interdisciplinary reviews. Developmental biology · 34 cites · DOI · PMC
  14. Cytochrome P450 monooxygenase lipid metabolites are significant second messengers in the resolution of choroidal neovascularization
    Hasegawa E, Inafuku S, Mulki L, Okunuki Y, Yanai R, Smith KE, Kim CB, Klokman G, … et al. (19 authors)
    Proceedings of the National Academy of Sciences of the United States of America · 34 cites · DOI · PMC
  15. HIV Exploits Antiviral Host Innate GCN2-ATF4 Signaling for Establishing Viral Replication Early in Infection
    Jiang G, Santos Rocha C, Hirao LA, Mendes EA, Tang Y, Thompson GR 3rd, Wong JK, Dandekar S
    mBio · 30 cites · DOI · PMC
  16. A new sensitive LC/MS/MS analysis of vitamin D metabolites using a click derivatization reagent, 2-nitrosopyridine
    Wan D, Yang J, Barnych B, Hwang SH, Lee KSS, Cui Y, Niu J, Watsky MA, … et al. (9 authors)
    Journal of lipid research · 27 cites · DOI · PMC
  17. Ccdc3: A New P63 Target Involved in Regulation Of Liver Lipid Metabolism
    Liao W, Liu H, Zhang Y, Jung JH, Chen J, Su X, Kim YC, Flores ER, … et al. (13 authors)
    Scientific reports · 25 cites · DOI · PMC
  18. Integrating multi-omics biomarkers and postprandial metabolism to develop personalized treatment for anorexia nervosa
    Shih PB
    Prostaglandins & other lipid mediators · 24 cites · DOI · PMC
  19. compMS2Miner: An Automatable Metabolite Identification, Visualization, and Data-Sharing R Package for High-Resolution LC-MS Data Sets
    Edmands WM, Petrick L, Barupal DK, Scalbert A, Wilson MJ, Wickliffe JK, Rappaport SM
    Analytical chemistry · 21 cites · DOI · PMC
  20. Postprandial effect to decrease soluble epoxide hydrolase activity: roles of insulin and gut microbiota
    Yang J, Oh YT, Wan D, Watanabe RM, Hammock BD, Youn JH
    The Journal of nutritional biochemistry · 20 cites · DOI · PMC
  21. Personalized polyunsaturated fatty acids as a potential adjunctive treatment for anorexia nervosa
    Shih PB, Morisseau C, Le T, Woodside B, German JB
    Prostaglandins & other lipid mediators · 18 cites · DOI · PMC
  22. Combined Effects of Gestational Phthalate Exposure and Zinc Deficiency on Steroid Metabolism and Growth
    Nuttall JR, Kucera HR, Supasai S, Gaikwad NW, Oteiza PI
    Toxicological sciences : an official journal of the Society of Toxicology · 16 cites · DOI · PMC
  23. Differential responses of human dendritic cells to metabolites from the oral/airway microbiome
    Whiteson K, Agrawal S, Agrawal A
    Clinical and experimental immunology · 14 cites · DOI · PMC
  24. Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients
    Wandro S, Carmody L, Gallagher T, LiPuma JJ, Whiteson K
    mSystems · 13 cites · DOI · PMC
  25. Oral microbe-host interactions: influence of β-glucans on gene expression of inflammatory cytokines and metabolome profile
    Silva VO, Pereira LJ, Murata RM
    BMC microbiology · 8 cites · DOI · PMC
  26. Metabolomic Modularity Analysis (MMA) to Quantify Human Liver Perfusion Dynamics
    Sridharan GV, Bruinsma BG, Bale SS, Swaminathan A, Saeidi N, Yarmush ML, Uygun K
    Metabolites · 6 cites · DOI · PMC

2016 (21)

  1. NAD(+) Replenishment Improves Lifespan and Healthspan in Ataxia Telangiectasia Models via Mitophagy and DNA Repair
    Fang EF, Kassahun H, Croteau DL, Scheibye-Knudsen M, Marosi K, Lu H, Shamanna RA, Kalyanasundaram S, … et al. (22 authors)
    Cell metabolism · 477 cites · DOI · PMC
  2. Mitochondrial Pyruvate Import Promotes Long-Term Survival of Antibody-Secreting Plasma Cells
    Lam WY, Becker AM, Kennerly KM, Wong R, Curtis JD, Llufrio EM, McCommis KS, Fahrmann J, … et al. (16 authors)
    Immunity · 241 cites · DOI · PMC
  3. Resistant starch alters gut microbiome and metabolomic profiles concurrent with amelioration of chronic kidney disease in rats
    Kieffer DA, Piccolo BD, Vaziri ND, Liu S, Lau WL, Khazaeli M, Nazertehrani S, Moore ME, … et al. (11 authors)
    American journal of physiology. Renal physiology · 221 cites · DOI · PMC
  4. Fatty Acid Oxidation is Impaired in An Orthologous Mouse Model of Autosomal Dominant Polycystic Kidney Disease
    Menezes LF, Lin CC, Zhou F, Germino GG
    EBioMedicine · 149 cites · DOI · PMC
  5. Gut microbiota drive the development of neuroinflammatory response in cirrhosis in mice
    Kang DJ, Betrapally NS, Ghosh SA, Sartor RB, Hylemon PB, Gillevet PM, Sanyal AJ, Heuman DM, … et al. (19 authors)
    Hepatology (Baltimore, Md.) · 93 cites · DOI · PMC
  6. Microbial metabolomics in open microscale platforms
    Barkal LJ, Theberge AB, Guo CJ, Spraker J, Rappert L, Berthier J, Brakke KA, Wang CCC, … et al. (11 authors)
    Nature communications · 61 cites · DOI · PMC
  7. Dysregulation of soluble epoxide hydrolase and lipidomic profiles in anorexia nervosa
    Shih PB, Yang J, Morisseau C, German JB, Zeeland AA, Armando AM, Quehenberger O, Bergen AW, … et al. (14 authors)
    Molecular psychiatry · 57 cites · DOI · PMC
  8. Bile acids promote diethylnitrosamine-induced hepatocellular carcinoma via increased inflammatory signaling
    Sun L, Beggs K, Borude P, Edwards G, Bhushan B, Walesky C, Roy N, Manley MW Jr, … et al. (12 authors)
    American journal of physiology. Gastrointestinal and liver physiology · 54 cites · DOI · PMC
  9. S-Adenosylmethionine Synthetase 3 Is Important for Pollen Tube Growth
    Chen Y, Zou T, McCormick S
    Plant physiology · 53 cites · DOI · PMC
  10. Mice Fed a High-Fat Diet Supplemented with Resistant Starch Display Marked Shifts in the Liver Metabolome Concurrent with Altered Gut Bacteria
    Kieffer DA, Piccolo BD, Marco ML, Kim EB, Goodson ML, Keenan MJ, Dunn TN, Knudsen KE, … et al. (10 authors)
    The Journal of nutrition · 47 cites · DOI · PMC
  11. The astrocytic transporter SLC7A10 (Asc-1) mediates glycinergic inhibition of spinal cord motor neurons
    Ehmsen JT, Liu Y, Wang Y, Paladugu N, Johnson AE, Rothstein JD, du Lac S, Mattson MP, … et al. (9 authors)
    Scientific reports · 40 cites · DOI · PMC
  12. Oxysterol-related-binding-protein related Protein-2 (ORP2) regulates cortisol biosynthesis and cholesterol homeostasis
    Escajadillo T, Wang H, Li L, Li D, Sewer MB
    Molecular and cellular endocrinology · 37 cites · DOI · PMC
  13. Wilson Disease: Epigenetic effects of choline supplementation on phenotype and clinical course in a mouse model
    Medici V, Kieffer DA, Shibata NM, Chima H, Kim K, Canovas A, Medrano JF, Islas-Trejo AD, … et al. (18 authors)
    Epigenetics · 31 cites · DOI · PMC
  14. Ingestion of the epoxide hydrolase inhibitor AUDA modulates immune responses of the mosquito, Culex quinquefasciatus during blood feeding
    Xu J, Morisseau C, Yang J, Lee KSS, Kamita SG, Hammock BD
    Insect biochemistry and molecular biology · 28 cites · DOI · PMC
  15. Identification of the Plant Ribokinase and Discovery of a Role for Arabidopsis Ribokinase in Nucleoside Metabolism
    Riggs JW, Rockwell NC, Cavales PC, Callis J
    The Journal of biological chemistry · 27 cites · DOI · PMC
  16. Unique plasma metabolomic signatures of individuals with inherited disorders of long-chain fatty acid oxidation
    McCoin CS, Piccolo BD, Knotts TA, Matern D, Vockley J, Gillingham MB, Adams SH
    Journal of inherited metabolic disease · 24 cites · DOI · PMC
  17. Obese Mice Fed a Diet Supplemented with Enzyme-Treated Wheat Bran Display Marked Shifts in the Liver Metabolome Concurrent with Altered Gut Bacteria
    Kieffer DA, Piccolo BD, Marco ML, Kim EB, Goodson ML, Keenan MJ, Dunn TN, Knudsen KE, … et al. (10 authors)
    The Journal of nutrition · 15 cites · DOI · PMC
  18. Role of Metabolomics in Traumatic Brain Injury Research
    Wolahan SM, Hirt D, Braas D, Glenn TC
    Neurosurgery clinics of North America · 15 cites · DOI · PMC
  19. An Integrative Genetic Study of Rice Metabolism, Growth and Stochastic Variation Reveals Potential C/N Partitioning Loci
    Li B, Zhang Y, Mohammadi SA, Huai D, Zhou Y, Kliebenstein DJ
    Scientific reports · 15 cites · DOI · PMC
  20. Peripheral fibroblast metabolic pathway alterations in juvenile rhesus monkeys undergoing long-term fluoxetine administration
    Su SY, Hogrefe-Phi CE, Asara JM, Turck CW, Golub MS
    European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology · 9 cites · DOI · PMC
  21. Effect of fish oil on monoepoxides derived from fatty acids during cardiac surgery
    Akintoye E, Wu JH, Hou T, Song X, Yang J, Hammock B, Mozaffarian D
    Journal of lipid research · 9 cites · DOI · PMC

2015 (16)

  1. Long-term neural and physiological phenotyping of a single human
    Poldrack RA, Laumann TO, Koyejo O, Gregory B, Hover A, Chen MY, Gorgolewski KJ, Luci J, … et al. (31 authors)
    Nature communications · 335 cites · DOI · PMC
  2. Alteration of the fecal microbiota and serum metabolite profiles in dogs with idiopathic inflammatory bowel disease
    Minamoto Y, Otoni CC, Steelman SM, Büyükleblebici O, Steiner JM, Jergens AE, Suchodolski JS
    Gut microbes · 260 cites · DOI · PMC
  3. Intracrine Androgens and AKR1C3 Activation Confer Resistance to Enzalutamide in Prostate Cancer
    Liu C, Lou W, Zhu Y, Yang JC, Nadiminty N, Gaikwad NW, Evans CP, Gao AC
    Cancer research · 223 cites · DOI · PMC
  4. Hypoxic preconditioning of mesenchymal stromal cells induces metabolic changes, enhances survival, and promotes cell retention in vivo
    Beegle J, Lakatos K, Kalomoiris S, Stewart H, Isseroff RR, Nolta JA, Fierro FA
    Stem cells (Dayton, Ohio) · 179 cites · DOI · PMC
  5. Genomic, Proteomic, and Metabolomic Data Integration Strategies
    Wanichthanarak K, Fahrmann JF, Grapov D
    Biomarker insights · 110 cites · DOI · PMC
  6. The circadian oscillator in Synechococcus elongatus controls metabolite partitioning during diurnal growth
    Diamond S, Jun D, Rubin BE, Golden SS
    Proceedings of the National Academy of Sciences of the United States of America · 103 cites · DOI · PMC
  7. Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism
    Edlund A, Yang Y, Yooseph S, Hall AP, Nguyen DD, Dorrestein PC, Nelson KE, He X, … et al. (11 authors)
    The ISME journal · 62 cites · DOI · PMC
  8. The butterfly effect in cancer: a single base mutation can remodel the cell
    Hart JR, Zhang Y, Liao L, Ueno L, Du L, Jonkers M, Yates JR 3rd, Vogt PK
    Proceedings of the National Academy of Sciences of the United States of America · 59 cites · DOI · PMC
  9. GH Receptor Deficiency in Ecuadorian Adults Is Associated With Obesity and Enhanced Insulin Sensitivity
    Guevara-Aguirre J, Rosenbloom AL, Balasubramanian P, Teran E, Guevara-Aguirre M, Guevara C, Procel P, Alfaras I, … et al. (13 authors)
    The Journal of clinical endocrinology and metabolism · 50 cites · DOI · PMC
  10. Acute and chronic plasma metabolomic and liver transcriptomic stress effects in a mouse model with features of post-traumatic stress disorder
    Gautam A, D'Arpa P, Donohue DE, Muhie S, Chakraborty N, Luke BT, Grapov D, Carroll EE, … et al. (11 authors)
    PloS one · 45 cites · DOI · PMC
  11. The human colostrum whey proteome is altered in gestational diabetes mellitus
    Grapov D, Lemay DG, Weber D, Phinney BS, Azulay Chertok IR, Gho DS, German JB, Smilowitz JT
    Journal of proteome research · 36 cites · DOI · PMC
  12. Lactococcus lactis metabolism and gene expression during growth on plant tissues
    Golomb BL, Marco ML
    Journal of bacteriology · 25 cites · DOI · PMC
  13. Epoxide hydrolase activities and epoxy fatty acids in the mosquito Culex quinquefasciatus
    Xu J, Morisseau C, Yang J, Mamatha DM, Hammock BD
    Insect biochemistry and molecular biology · 23 cites · DOI · PMC
  14. Nutrition and metabolic correlates of obesity and inflammation: clinical considerations
    Johnson AR, Makowski L
    The Journal of nutrition · 19 cites · DOI · PMC
  15. Phospholipase A1 modulates the cell envelope phospholipid content of Brucella melitensis, contributing to polymyxin resistance and pathogenicity
    Kerrinnes T, Young BM, Leon C, Roux CM, Tran L, Atluri VL, Winter MG, Tsolis RM
    Antimicrobial agents and chemotherapy · 15 cites · DOI · PMC
  16. Functional coupling of ATP-binding cassette transporter Abcb6 to cytochrome P450 expression and activity in liver
    Chavan H, Li F, Tessman R, Mickey K, Dorko K, Schmitt T, Kumer S, Gunewardena S, … et al. (10 authors)
    The Journal of biological chemistry · 9 cites · DOI · PMC

2014 (7)

  1. Randomised clinical trial: Lactobacillus GG modulates gut microbiome, metabolome and endotoxemia in patients with cirrhosis
    Bajaj JS, Heuman DM, Hylemon PB, Sanyal AJ, Puri P, Sterling RK, Luketic V, Stravitz RT, … et al. (21 authors)
    Alimentary pharmacology & therapeutics · 224 cites · DOI · PMC
  2. OCT1 is a high-capacity thiamine transporter that regulates hepatic steatosis and is a target of metformin
    Chen L, Shu Y, Liang X, Chen EC, Yee SW, Zur AA, Li S, Xu L, … et al. (20 authors)
    Proceedings of the National Academy of Sciences of the United States of America · 194 cites · DOI · PMC
  3. Metabolomics as a tool for discovery of biomarkers of autism spectrum disorder in the blood plasma of children
    West PR, Amaral DG, Bais P, Smith AM, Egnash LA, Ross ME, Palmer JA, Fontaine BR, … et al. (13 authors)
    PloS one · 126 cites · DOI · PMC
  4. Breast-fed and bottle-fed infant rhesus macaques develop distinct gut microbiotas and immune systems
    Ardeshir A, Narayan NR, Méndez-Lagares G, Lu D, Rauch M, Huang Y, Van Rompay KK, Lynch SV, … et al. (9 authors)
    Science translational medicine · 103 cites · DOI · PMC
  5. Mealtime, temporal, and daily variability of the human urinary and plasma metabolomes in a tightly controlled environment
    Kim K, Mall C, Taylor SL, Hitchcock S, Zhang C, Wettersten HI, Jones AD, Chapman A, … et al. (9 authors)
    PloS one · 73 cites · DOI · PMC
  6. Biomarker discovery study design for type 1 diabetes in The Environmental Determinants of Diabetes in the Young (TEDDY) study
    Lee HS, Burkhardt BR, McLeod W, Smith S, Eberhard C, Lynch K, Hadley D, Rewers M, … et al. (16 authors)
    Diabetes/metabolism research and reviews · 51 cites · DOI · PMC
  7. Fluoxetine: juvenile pharmacokinetics in a nonhuman primate model
    Golub MS, Hogrefe CE
    Psychopharmacology · 9 cites · DOI · PMC

2013 (2)

  1. Human milk secretory immunoglobulin a and lactoferrin N-glycans are altered in women with gestational diabetes mellitus
    Smilowitz JT, Totten SM, Huang J, Grapov D, Durham HA, Lammi-Keefe CJ, Lebrilla C, German JB
    The Journal of nutrition · 78 cites · DOI · PMC
  2. Reversing the rewiring of cancer
    Filipp FV
    International innovation : disseminating science, research and technology · PMC
Generated 2026-10-22 from live PMC full-text search. PMC search query: "West Coast Metabolomics Center"[All Fields]. Citation counts come from NIH iCite and reflect PubMed-indexed citations only (Scopus and Google Scholar typically report higher totals).
West Coast Metabolomics Center

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